Data, software & code
This page brings together packages & data that were developed primarily in the course of research. Teaching-focused tools and course resources are on the Teaching page.
Many items were developed collaboratively; see individual links for details.
R packages
| Package | Purpose | Links | Year |
|---|---|---|---|
| statsapps | Interactive Shiny apps for building statistical intuition. | CRAN · GitHub | 2026 |
| AvInertia | Calculate center of gravity and moment of inertia tensor of a flying bird. | CRAN · GitHub · Paper | 2021 |
| gaussplotR | Fit, predict, and visualize two-dimensional Gaussian functions. | CRAN · GitHub · Paper | 2021 |
| pathviewr | Import, clean, and visualize animal movement data from Flydra or Motive. | CRAN · GitHub | 2021 |
| genbank_downloadR | Batch download DNA or protein sequences from GenBank. | Figshare · GitHub | 2020 |
| workloopR | Import, transform, and analyze muscle physiology experiments. | CRAN · GitHub · Paper | 2019 |
No matching items
Data & code from pubs
Some of these repositories contain phylogenies that we’ve inferred, but see the Phylogenetic trees section below for straightforward access to MCC & ML trees.
| Repository | Article | Year |
|---|---|---|
| Figshare |
Baliga VB, Dakin R, Wylie DR, and Altshuler DL. Proceedings of the Royal Society B: Biological Sciences · Article |
2024 |
| Figshare |
Dash S, Baliga VB, Lapsansky AB, Wylie DR, and Altshuler DL. eNeuro · Article |
2024 |
| Figshare |
Harvey C, Baliga VB, Wong JCM, Altshuler DL, and Inman DJ. Nature · Article |
2022 |
| Figshare |
Smyth G, Baliga VB, Gaede AH, Wylie DR, and Altshuler DL. Current Biology · Article |
2022 |
| Figshare |
Harvey C, Baliga VB, Goates CD, Hunsaker D, and Inman DJ. Journal of the Royal Society Interface · Article |
2021 |
| Figshare |
Leal PBC, Cabral-Seanez M, Baliga VB, Altshuler DL, and Hartl DJ. Journal of the Royal Society Interface · Article |
2021 |
| Figshare |
Bahlman JW, Baliga VB, and Altshuler DL. Journal of Experimental Biology · Article |
2020 |
| Figshare |
Baliga VB and Mehta RS. Integrative and Comparative Biology · Article |
2019 |
| Figshare |
Baliga VB, Szabo I, and Altshuler DL. Science Advances · Article |
2019 |
| GitHub |
Damsgaard C, Baliga VB, Bates E, Burggren W, McKenzie DJ, Taylor E, and Wright PA. Acta Physiologica · Article |
2019 |
| Figshare |
Harvey C, Baliga VB, Lavoie P, and Altshuler DL. Journal of the Royal Society Interface · Article |
2019 |
No matching items
Phylogenetic trees
I am generally happy to share trees from posterior distributions — just shoot me an email.
Birds (Aves)
Gobies (Gobiidae)
- 54 species of Western Atlantic gobies + outgroup; from Baliga and Mehta 2019 (Integrative and Comparative Biology):
- Bayesian MCC tree (download)
Marine angelfishes (Pomacanthidae)
- 72 species of marine angelfishes + outgroup; from Baliga and Mehta 2019 (Integrative and Comparative Biology):
- Bayesian MCC tree (download)